Cytoscape 2 2 User Manual Nov 2005 The Cytoscape Collaboration The Cytoscape project is an ongoing collaboration between University of California at San Diego Institute for Systems Biology Institut D Memorial Sloan Kettering Cancer Center Funding for Cytoscape is provided by a federal grant from the U S National Institute of General Medical Sciences NIGMS of the National Institutes of Health NIH under award number GM070743 01 Corporate funding i
February 13 2014 Welcome Summary e Cytoscape v3 1 is now available for immediate download e Relative to v3 0 2 it addresses 236 issues e Itis ready for use by all segments of the Cytoscape community e It continues v3 0 s core feature set specifically o Itcontains improvements for all segments of the Cytoscape community o Itis upward compatible and can coexist with previous Cytoscape versions o The most popular plugins from previous versions are available with mor
April 19 2013 Welcome Summary e Cytoscape v3 0 1 is now available for immediate download e Relative to v3 0 0 it contains over 100 bug fixes e It is ready for use by all segments of the Cytoscape community e It continues v3 0 0 s core feature set specifically It is a major reorganization of Cytoscape 2 x s code and user interface o It contains improvements for all segments of the Cytoscape community o Itis upward compatible and can coexist with previous Cytoscape
January 31 2013 Welcome Summary e Cytoscape v3 0 is now available for immediate download e It is a major reorganization of the Cytoscape code and user interface e It contains improvements for all segments of the Cytoscape community e Itis upward compatible and can coexist with previous Cytoscape versions e The most popular plugins from previous versions are available with more to follow e Support offerings have been updated and broadened e What todo next Dear Cyto
User Guide for ModuLand Cytoscape plug in Created for the ModuLand plug in version 1 4 May 2012 This user guide is based on the following publications where the ModuLand method and its versions have been described in detail Kovacs et al and their Cytoscape plug in has been introduced Szalay Beko et al Please cite these publications if publishing your results with this program e Kovacs I A Palotai R Szalay Beko M and Csermely P 2010 Community landscapes
Karma Provenance Retrieval and Visualization Plugin For Cytoscape User Manual v1 2 0 Feb 24th 2012 Copyright 2012 The Trustees of Indiana University This document contains instructions for using the Karma provenance retrieval and visualization plugin version 1 2 0 which provides core capability to retrieve provenance information from a Karma provenance system and visualize the returned graph Karma provenance retrieval and visualization plugin 1S licensed under Apache License
Cytoscape User Manual Table of Contents Cyloseape 27 User Mail ee ee ee ern 3 In TO N a erneuern us een 3 IBI TODE EET 4 bec o 4 b dor m al ga 4 I GutchiBe OSC Denen ui ae 4 System AAA ne ee ee rer 5 Getting SeU MT EE E E E E E 46 Ote Tour OF E OSCE E E E E EAE I 9 In MeS een ee 11 INGOWOEK Manaschient corn acne 13 The Network Overview WINdOW neun 16 Command Line Ars UMS ic cncatacecse ts cia docotucdsea
Cytoscape User Manual Table of Contents C VIOSCapE User Mandak ee pe a ee ee ee 3 TET ORIN DOM ee euere ee 48 DEV TODE E 4 Bec asec 4 bdo S E e ER 4 Please Cite lbs sci IE Jt RTE 1 16 210 PA er ee ee ee 8 System regure MENS EE 8 Se o AA nn A EEE 56 ore Milit er P m TTE 12 ju Xu 15 Network MAMAS eie D sus eric eds 18 Th
July 30 2013 Welcome Summary e Cytoscape v3 0 2 is now available for immediate download e Relative to v3 0 1 it addresses thirteen issues primarily of interest to Google Summer of Code developers e Itis ready for use by all segments of the Cytoscape community e It continues v3 0 0 s core feature set specifically It is a major reorganization of Cytoscape 2 x s code and user interface o It contains improvements for all segments of the Cytoscape community o It is
Cytoscape User Manual Table of Contents Cyloscape 2 al User Mamia eenen eE EE ERER rE na Wedane EE oraa i 2 IMGT OIG E a EA E E A E EE A AE A E E E A E E A E 3 Descon aie gece ree E EE E E E 3 ETE SS E E T E EEEE E T E E E A E E T E ES 3 WEEN e 9 EE E EE E E E EE A E 4 Lavandin C y OSC ae derrr r E E 5 Syse regure MeN sereen i i E E TE TEA 5 Geine Sre d eenen E EEEE E E E E E 5 ek TOUT OR OC e eS E E E E E E E E EREE 8 Toe MEMS esc a suai pad ocscn enact aaecetes nes eate
Cytoscape 2 1 User Manual Feb 2005 The Cytoscape Collaboration The Cytoscape project is an ongoing collaboration between e Po HE University of California at San Diego Institute for Systems Biology f j Memorial Sloan Kettering Cancer Center Institut pasiou Y a wees Funding for Cytoscape is provided by a federal grant from the U S National Institute of General Medical Sciences NIGMS of the National Institutes of Health NIH under award number GM
NetKarma Provenance Retrieval and Visualization Plug in For Cytoscape User Manual V1 1 0 August 21 2011 NetKarma DATA TO INSIGHT CENTER INDIANA UNIVERSITY Pervasive Technology Institute Copyright 2011 The Trustees of Indiana University This document contains instructions for using the NetKarma provenance retrieval and visualization plug in version 1 1 0 which provides core capability to retrieve provenance information from a NetKarma provenance system and visual