gada R package User s manual Roger Pique Regi and Juan R Gonz lez December 12 2008 Abstract This manual describes the gada package that implements a flexible and efficient analysis pipeline to detect genomic copy number alterations from microarray data The package can import the raw copy number normalized intensities provided by Illumina BeadStudio Affymetrix powertools or any similar format Probes of different samples are split into separate files and can be analyzed
gada package User s manual Roger Pique Regi Alejandro Caceres and Juan R Gonzalez April 7 2010 Abstract The gada package is the implementation of a flexible and efficient analysis pipeline to detect genomic copy number alterations from quantitative data The package can import the raw copy number normal ized intensities provided by Illumina BeadStudio Affymetrix powertools or any similar format Probes of different samples are split into separate files and can be an